<?xml version="1.0" encoding="UTF-8"?>
<!--$Id: assay_submission_good.xml,v 1.15 2004/10/16 20:16:33 mummi Exp $ -->
<assay_submission lsid="urn:lsid:dcc.hapmap.org:Batch:23432:1" xmlns="http://www.hapmap.org"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.hapmap.org http://www.hapmap.org/xml-schema/2003-11-04/hapmap.xsd">
    <!--  http://www.hapmap.org file:///Users/mummi/cvswork/HapMap-DCC/xml/schema/hapmap.xsd ">  -->
       
    <batch_info>
        <class>NEW</class>
        <date_created>2003-09-14</date_created>
        <contact>
            <name>mummi</name>
            <email>mummi@cshl.org</email>
        </contact>
        <comment> This a test submission file that has valid XML and consistent assay data (i.e.
            oligos that actually are derived from the parent SNP flanks. This file should pass the
            upload-processing tests, get imported into the tracking database, pass the consistency
            tests there an eventually get imported into the main database. Last updated: $Date:
            2004/04/05 14:27:28 $ </comment>
    </batch_info>
    <assays>
        <!--Illumina's BeadArray platform (also used by Sanger and McGill/GQIC)-->
        <assay lsid="urn:lsid:illumina.hapmap.org:Assay:good_1:1">
            <snp_assayed lsid="urn:LSID:ncbi.nlm.nih.gov:dbSNP;refSNP:rs1455353:88"/>
            <protocol_used lsid="urn:LSID:illumina.hapmap.org:Protocol:Golden_Gate_assay_design_1.0.0:1"/>
            <batch type="multiplex-pool">pool-13_2003-02-11</batch>
            <status>
                <pass/>
            </status>
            <input_parameters>
                <beadarray_platform>
                    <seq_for_oligo_design>ATAGGCATATTCCCTGTGCTTCAGGATCCCGTCCAACAATAAGGACCCATTAACACACACACATGACAGACGCAACTGGCCAATTTTTTAAGTCTAATCTGAAAAGCATTCTTGATTGCC[C/T]GCTAGCATAAAGAATCCCCTTTAAACTCTGTATCAAACAAGACAATACCAAAAAGCTACTCATAAAATCATATATACTATTCAATTCCCAATATATATAAAATTAAATATGAAAA</seq_for_oligo_design>
                </beadarray_platform>
            </input_parameters>
            <output_design>
                <strand>forward</strand>
                <beadarray_platform>
                    <allele1_combined_seq>ACTTCGTCAGTAACGGACTCTGAAAAGCATTCTTGATTGCCT</allele1_combined_seq>
                    <allele2_combined_seq>GAGTCGAGGTCATATCGTTCTGAAAAGCATTCTTGATTGCCC</allele2_combined_seq>
                    <common_combined_seq>CTAGCATAAAGAATCCCCTTTAACTCAATCTTTGCGAGACACGTCGGTCTGCCTATAGTGAGTC</common_combined_seq>
                    <illumina_strand>bottom</illumina_strand>
                </beadarray_platform>
            </output_design>
        </assay>
        <!--IMSUT-Riken's Invader platform -->
        <assay lsid="urn:lsid:imsut-riken.hapmap.org:Assay:good_2:1">
            <snp_assayed lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs2039931:94"/>
            <protocol_used lsid="urn:LSID:imsut-riken.hapmap.org:Protocol:assay_design:1"/>
            <batch type="multiplex-pool">pool-13_2003-02-11</batch>
            <status>
                <pass/>
            </status>
            <input_parameters>
                <invader_platform>
                    <seq_for_probe_design>TTAATTGACCTTGAATGAAAATGTATATTTAAACCAATATGTATAACCTGGTAGAATAAG[C/T]GGAGGAGGTGAGTTACAAAATTCTCTTAAACTAATTGCACAGTCAGCCCTACCCTTTGTA</seq_for_probe_design>
                    <seq_for_primer_design>AGACTGATGAATAGTGGGTTTGATGTATTTGAATCATTCAGCACTTTGAGTTAAATGTGCATATTCTGTTCAAAATAGACAATGGGGAGGGGCAGTCCCCCCTTTCCCTCTCTAACTTGCATAACATCAGGCCTCACTGCTTTAACTAATGAGTATTTAGAAGTAAAGGCTCCTACTGATTCCAGCGAGTCATTAATTCTCTGCTTGCAGAGCCACTGTGGAGTTTTTCATCGGCCACATTTTTTTAGCTTTTACCAAGTTGCTTCTGAGCAGCAGTGCTGACCCCGGGCTCCTGTGTGTACCACACACCAGACACATAATGGGCTTGAAAGTCCCCTTGCAAGGAATTTTACTGGGGACCAGGAACAAATTACAAAGAAGATGCATATTCTAGCCACTCTGTTGACAAAGATGTCTCAGAACTCTTAGTTTTAGGGAACTTAATTGACCTTGAATGAAAATGTATATTTAAACCAATATGTATAACCTGGTAGAATAAGCGGAGGAGGTGAGTTACAAAATTCTCTTAAACTAATTGCACAGTCAGCCCTACCCTTTGTAATAATGAATGTTTGCTCCATTATCGCTCCAGGTTTATTATTTTCTAAACAGCCTCATTGATCTTGCCTCAGTGGGCTTTCCATTTTTACACATTACATTCTCTTGGGAATTGAAAAGCACGGTGTCTCTGAAGATGCTCAGTCAACTTGAAAACACTCATTTTTGAAAAGGTCTTAACCTGCCTTCAACTTGAAGCAATTCAGACTTTGCCCAAACAAACATTAGAGCAGAGACACATCACTCGTGTATATGTTTCTACCATCACTGGGAAGCTGTTTGTCTGAAAGGTCATTTACAGACCGTTTTTTAGGGTATTGAAAATTCAGGGATCTATACTCATAACTAAAATGAATGTACATGTAATTGAGAGCATGGCACTTTATTATAATGGATTCTGCATTATTCAATATCATAAATATTTTGTGGAAGGCCCTATTTCG</seq_for_primer_design>
                </invader_platform>
            </input_parameters>
            <output_design>
                <strand>reverse</strand>
                <invader_platform>
                    <pcr_primer_forward>CCACTCTGTTGACAAAGATGTCTC</pcr_primer_forward>
                    <pcr_primer_reverse>AAGGGTAGGGCTGACTGTGC</pcr_primer_reverse>
                    <invader_probe>TTAATTGACCTTGAATGAAAATGTATATTTAAACCAATATGTATAACCTGGTAGAATAAGA</invader_probe>
                    <allele_probe1>CGGAGGAGGTGAGTTA</allele_probe1>
                    <allele_probe2>TGGAGGAGGTGAGTTAC</allele_probe2>
                </invader_platform>
            </output_design>
        </assay>
        <!--Whitehead's Sequenom platform -->
        <assay lsid="urn:lsid:wicgr.hapmap.org:Assay:good_3:1">
            <snp_assayed lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs8:36"/>
            <protocol_used lsid="urn:lsid:wicgr.hapmap.org:Protocol:assay_design_1:1"/>
            <batch type="multiplex-pool">batch_2003-02-11</batch>
            <status>
                <pass/>
            </status>
            <input_parameters>
                <sequenom_platform>
                    <seq_for_oligo_design>TCCTTCTGCATTTCTGGGCTTTATGGACCCCACATTTGGACTTCTCTGTGAATCTATACTAAATTTTAAAGGAAACGAAAAAAAAAAACCAAAACCAAAAACAAAAAACACTTAACAAAAAAACCCCACCACTGTAATTAGGTTAAATCTGGCAGGTCAAAAAACAGAACACCAACAACTACACATGCTTCATAGCCAGATCCAAGCTTCTTTTTAATTATGGGCAGTTTGGGGTGAATTATACAACTCCATTAAAATTAACCAGAATCCATTGAAAATTTTTTCCTCACATTTATCTACTTCTAAACATTCTGGTTTTTAAGTTTTAATATCCATTCCTAAACTTAATATTTTCCCCTAATGTTACTTATTCTGGAAAATTATTCCAATAAAGTAAAAACTCTTAACAGATTTATTAAAGATAGTACCATAAATCATATTAAGTCTCACACTCTAAAAATATGATTGCTATCATGCATGGATTTAATATGTGGAAAATTTATCAAAACAGTTCTTTTGCCTTGATAATTCAAGATAACTACAACTATTCACAGGCTTTTTTAAGCCAGCTTATTGCTATTAAATCCACATACTTGGACAACTTCACTCTTTTCTTCCTATTGAAAAAGAAAATGGAGTTCCACAATCCCCAACTTTCTTTATATCTGTTGCTTGTATTTTTGTAATAAAATAAAAGAGCAGTGAACCAAAAATGGCATGTCCCTAAAGTCAAATACAAACACAGAGCTGTTTCATACTATGACCATTTCAGTTGTGTTTCTGAAACATTACTTTAAAAATATTTCCCATTATAATTAATATATTTAGTGAAAAAATTACATTGCTTACCACTACCTGGAATCAATAGTAATTTTAGTAACTCCAGTTCTTACTGCATTTATAGTTTATCatatatatatatatatatatataAGATATTATAGTAATTTNCAAAAGAGAAAAAATTCTGACGGGGGCATAACTGGAGAATAAAGTGATC[T/C]TAAAATACTGCTGAAACAAAAAGTCATCTGCCCCCTGGACNGTTGTCTTAGAAGTTACCTAACAACCCTGGCAGTATGCCCTGTTGCTTCATCTCACTGAAACCGTTTTCAAGCACTCTTTGCATGACACAATTTAAAAATAACATCTAACCCACCCAAGTTGCTTTCCTCAGAGTTATACTGCTCTCTTCAAAATATTAAGACTCACTGATGCCACCTGCAGCAACTGGACTCCAGGCCTCAGTTTCAATGGATGCTCAAGATACGAAAGGTGAGCTCACTGAAGCCACTACTAATTGTCCTAAATGATAAACCTTGGAGAAAAAAGGACTCATTTCAATCGGTAGTTTTTAAAACATGGAATTTTAAAGAGATGTGTAATAGTCCATAGAGCAGAACATTTTCACATAAATTTTAATGTATATACTTGCATATTCTTAAAAAATGGTATTAGGTAGAAGTGACTCCTCCAGGTTCAAGGAAATAATCCTTTTTAATTTTTAAGGTGCCATTATTATTAACTTCATTCAGGAAATGGAGCATATTAGAGACTTCTCA</seq_for_oligo_design>
                </sequenom_platform>
            </input_parameters>
            <output_design>
                <strand>forward</strand>
                <sequenom_platform>
                    <pcr_primer_forward>GGGCATAACTGGAGAATAAA</pcr_primer_forward>
                    <pcr_primer_reverse>GGGCAGATGACTTTTTGTTTC</pcr_primer_reverse>
                    <extension_probe>ATAACTGGAGAATAAAGTGATC</extension_probe>
                </sequenom_platform>
            </output_design>
        </assay>
        
        <!-- Affymetrix Centurion platform-->
        <assay lsid="urn:LSID:affymetrix.hapmap.org:Assay:620871:1">
  <snp_assayed lsid="urn:LSID:ncbi.nlm.nih.gov:dbSNP;refSNP:rs1437498:1"/>
  <protocol_used lsid="urn:LSID:affymetrix.hapmap.org:Protocol:affy_assay_design_1:1"/>
  <batch type="multiplex-pool">Affy_117K_Xba</batch>
  <status> <pass/> </status>
  <input_parameters>
    <affymetrix_mapping100k_platform>
      <seq_for_oligo_design>gaaggtactgagtaactattaagca[C/T]cattatggttaatatgtttgctgaa</seq_for_oligo_design>
    </affymetrix_mapping100k_platform>
  </input_parameters>
  <output_design>
    <strand>forward</strand>
    <affymetrix_mapping100k_platform>
      <allele_a_probe>AACTATTAAGCACCATTATGGTTAA</allele_a_probe>
      <allele_b_probe>AACTATTAAGCATCATTATGGTTAA</allele_b_probe>
    </affymetrix_mapping100k_platform>
  </output_design>
</assay>

        <!--UCSF/WU's FTP-TDI platform -->
        <assay lsid="urn:lsid:ucsf-wu.hapmap.org:Assay:good_4:1">
            <snp_assayed lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs1024748:116.2"/>
            <protocol_used lsid="urn:lsid:ucsf-wu.hapmap.org:Protocol:assay_design:1"/>
            <batch type="multiplex-pool">batch_2003-02-11_ff</batch>
            <status>
                <pass/>
            </status>
            <input_parameters>
                <fp_tdi_platform>
                    <seq_for_pcr_oligo_design>TATATGGTTATATTTCATTAATATATTCTAGTTTGTTCAGCTGTTCTTACTGGGTGAATTTGTGTGGTTTCCTGACATTTTTGTTTTTAGTAGTGCCTCAGTAGTTTTATACATAATTACGTTTCCCTTCTGGATTATTTCCTTAGTATCTAGTTCAAGAAGTGAAATCGCTGGATTCTTGTGGTAAATTTTTGAATTTCACAGTATAATGCTGATTTTCTCAAAGTCTCACATTCTAAGAAAGTATAATGAGGCAAAACAAACAACAAACATCTTAAGTTGATTTTTTCCTAGCATCTTTTCCTTCCATCTTTGCTTGTAGAATCTAGACTATTTCATGAACCCAAGATATAATCAGTATCCTTCTTCAGTATGGCCAAAGTGAGTTTCTCATTATTTTACCTCCCCTTCAGGAAATGACTTTTCATCTTGTGTTTTGGGAGCCATAGATGGTTCTGGGCAGGAAACTGGCTTTGGATAGACCCAGCATGTAGATGGCTATTTGGCCTTGCTCCCAGTATAACGATGCAGTTCCCTGTGAAAGGGTATGAGTAGGTTTTGGGGCTCTGGATACCGTGTGGCCTGAAGAGACAAGGGCTCAATGCCAACTCTGCCTGTTTCCAACTGTGTAACCATGTGAGCGTCAAAAATCATGGACGTGCTCTGGTTAACACTGAGTGGGAGCTCAACAAATTATTATTTTTAATTGTTACTTGGACATGGCCAAGTTGACTACACTTTATGTTCTGCTACCTGCCAGTCTGAAAGTGACGCCACAGAAGGTGAACCGCATGTTGGGAGATGCTCCTCATCTGCTTAAATGAGGTGCAAACACAGCCCATGCGCCTGCTCTTCATGACTGTATCTGTACCAGCAATATTTGTATTGGCAAATCACATGCCCCAGTGGGAACTACTTAAGGGGAATTCAATGGATTTCATTCCTTTTATGTAATTGGCCACTTAGTAATAGACGTGTAGGTCTCTTGTGTGGATAAGGATTCTGCCTTTTATGTAAGATATGTGTTGCAATTCAGCTTTCAGGTCCCAGCCCCGGGAAGGCTCCAGGCCTTCACAAACTGGCCCACCCACGAGAAGGAAAGCAATTGTCCAAATGTGGGTAGCTTTTCTTCCCACTGTTGTCAGCTGCTTCCAATTAGCCCCCATATACATAATCCCAGTTTGTGTCTGTATCAGTACAATTCTCCCATGTCAATGTGAATTTTAAGCCACAGAGGGAAAGGGGACAGAGAATATGCTTTCATTCAGCTCTCCTCGTCTCACAC</seq_for_pcr_oligo_design>
                    <seq_for_extension_oligo_design>TTCTCATTATTTTACCTCCCCTTCAGGAAATGACTTTTCANCTTGTGTTTTGGGAGCCATAGATGGTTCTGGGCAGGAAAC</seq_for_extension_oligo_design>
                </fp_tdi_platform>
            </input_parameters>
            <output_design>
                <strand>forward</strand>
                <fp_tdi_platform>
                    <pcr_primer_forward>AGGCAAAACAAACAACAAACATC</pcr_primer_forward>
                    <pcr_primer_reverse>TAGCCATCTACATGCTGGGTCTA</pcr_primer_reverse>
                    <extension_primer>CCCCTTCAGGAAATGACTTTTCA</extension_primer>
                </fp_tdi_platform>
            </output_design>
        </assay>
        <!--Baylor's Inversion probe platform -->
        <assay lsid="urn:lsid:bcm.hapmap.org:Assay:good_5:1">
            <snp_assayed lsid="urn:LSID:ncbi.nlm.nih.gov:dbSNP;refSNP:rs2066407:1"/>
            <protocol_used lsid="urn:LSID:bcm.hapmap.org:Protocol:assay-design_0001:1"/>
            <batch type="multiplex-pool">batch_2003-02-11_ff</batch>
            <status>
                <pass/>
            </status>
            <input_parameters>
                <mip_platform>
                    <seq_for_mip_probe_design>GCAGCAGGGCTGGTGGCACATTCAGTGTCCACTGGCTGTAGCATCAGCATCTTGCGGTAGCCCCAGAAATGCTCTCACTGACCACTTACAGCATCTGCTC[M]TGCCAAGGTTGCCCCTGAGTCTGGCTCTCCAGCCTTCCAGGCTGTCTGCCCTGTTCTACCTAAGGTAACCACATTTGGATGCTGTTGCTTACAGCCAAGG</seq_for_mip_probe_design>
                </mip_platform>
            </input_parameters>
            <output_design>
                <strand>forward</strand>
                <mip_platform>
                    <mip_probe>TGCCAAGGTTGCCCCTGTTTTACGGCTCAACGTTCCTATTCGGTTUUUTTGCAAATGTTATCGAGGTCCGGCGCAGCTCTATACATTTCACGTTTAAACCACTTACAGCATCTGCT</mip_probe>
                </mip_platform>
            </output_design>
        </assay>
        <!-- and a bunch of Illumina-derived ones for other testing -->
        <assay lsid="urn:lsid:illumina.hapmap.org:Assay:good_6:1">
            <snp_assayed lsid="urn:LSID:ncbi.nlm.nih.gov:dbSNP;refSNP:rs1455353:88"/>
            <protocol_used lsid="urn:LSID:illumina.hapmap.org:Protocol:Golden_Gate_assay_design_1.0.0:1"/>
            <batch type="multiplex-pool">pool-13_2003-02-11</batch>
            <status>
                <pass/>
            </status>
            <input_parameters>
                <beadarray_platform>
                    <seq_for_oligo_design>ATAGGCATATTCCCTGTGCTTCAGGATCCCGTCCAACAATAAGGACCCATTAACACACACACATGACAGACGCAACTGGCCAATTTTTTAAGTCTAATCTGAAAAGCATTCTTGATTGCC[C/T]GCTAGCATAAAGAATCCCCTTTAAACTCTGTATCAAACAAGACAATACCAAAAAGCTACTCATAAAATCATATATACTATTCAATTCCCAATATATATAAAATTAAATATGAAAA</seq_for_oligo_design>
                </beadarray_platform>
            </input_parameters>
            <output_design>
                <strand>forward</strand>
                <beadarray_platform>
                    <allele1_combined_seq>ACTTCGTCAGTAACGGACTCTGAAAAGCATTCTTGATTGCCT</allele1_combined_seq>
                    <allele2_combined_seq>GAGTCGAGGTCATATCGTTCTGAAAAGCATTCTTGATTGCCC</allele2_combined_seq>
                    <common_combined_seq>CTAGCATAAAGAATCCCCTTTAACTCAATCTTTGCGAGACACGTCGGTCTGCCTATAGTGAGTC</common_combined_seq>
                    <illumina_strand>bottom</illumina_strand>
                </beadarray_platform>
            </output_design>
        </assay>
        <assay lsid="urn:lsid:illumina.hapmap.org:Assay:good_7:1">
            <snp_assayed lsid="urn:LSID:ncbi.nlm.nih.gov:dbSNP;refSNP:rs1455353:88"/>
            <protocol_used lsid="urn:LSID:illumina.hapmap.org:Protocol:Golden_Gate_assay_design_1.0.0:1"/>
            <batch type="multiplex-pool">pool-13_2003-02-11</batch>
            <status>
                <pass/>
            </status>
            <input_parameters>
                <beadarray_platform>
                    <seq_for_oligo_design>ATAGGCATATTCCCTGTGCTTCAGGATCCCGTCCAACAATAAGGACCCATTAACACACACACATGACAGACGCAACTGGCCAATTTTTTAAGTCTAATCTGAAAAGCATTCTTGATTGCC[C/T]GCTAGCATAAAGAATCCCCTTTAAACTCTGTATCAAACAAGACAATACCAAAAAGCTACTCATAAAATCATATATACTATTCAATTCCCAATATATATAAAATTAAATATGAAAA</seq_for_oligo_design>
                </beadarray_platform>
            </input_parameters>
            <output_design>
                <strand>forward</strand>
                <beadarray_platform>
                    <allele1_combined_seq>ACTTCGTCAGTAACGGACTCTGAAAAGCATTCTTGATTGCCT</allele1_combined_seq>
                    <allele2_combined_seq>GAGTCGAGGTCATATCGTTCTGAAAAGCATTCTTGATTGCCC</allele2_combined_seq>
                    <common_combined_seq>CTAGCATAAAGAATCCCCTTTAACTCAATCTTTGCGAGACACGTCGGTCTGCCTATAGTGAGTC</common_combined_seq>
                    <illumina_strand>bottom</illumina_strand>
                </beadarray_platform>
            </output_design>
        </assay>
        <assay lsid="urn:lsid:illumina.hapmap.org:Assay:good_8:1">
            <snp_assayed lsid="urn:LSID:ncbi.nlm.nih.gov:dbSNP;refSNP:rs1455353:88"/>
            <protocol_used lsid="urn:LSID:illumina.hapmap.org:Protocol:Golden_Gate_assay_design_1.0.0:1"/>
            <batch type="multiplex-pool">pool-13_2003-02-11</batch>
            <status>
                <pass/>
            </status>
            <input_parameters>
                <beadarray_platform>
                    <seq_for_oligo_design>ATAGGCATATTCCCTGTGCTTCAGGATCCCGTCCAACAATAAGGACCCATTAACACACACACATGACAGACGCAACTGGCCAATTTTTTAAGTCTAATCTGAAAAGCATTCTTGATTGCC[C/T]GCTAGCATAAAGAATCCCCTTTAAACTCTGTATCAAACAAGACAATACCAAAAAGCTACTCATAAAATCATATATACTATTCAATTCCCAATATATATAAAATTAAATATGAAAA</seq_for_oligo_design>
                </beadarray_platform>
            </input_parameters>
            <output_design>
                <strand>forward</strand>
                <beadarray_platform>
                    <allele1_combined_seq>ACTTCGTCAGTAACGGACTCTGAAAAGCATTCTTGATTGCCT</allele1_combined_seq>
                    <allele2_combined_seq>GAGTCGAGGTCATATCGTTCTGAAAAGCATTCTTGATTGCCC</allele2_combined_seq>
                    <common_combined_seq>CTAGCATAAAGAATCCCCTTTAACTCAATCTTTGCGAGACACGTCGGTCTGCCTATAGTGAGTC</common_combined_seq>
                    <illumina_strand>bottom</illumina_strand>
                </beadarray_platform>
            </output_design>
        </assay>
        <!--- For testing that the interim ABI LSID to rs# resolving code works properly -->
        <assay lsid="urn:LSID:sanger.hapmap.org:Assay:1353433:1">
            <snp_assayed lsid="urn:LSID:jcm.hapmap.org:ssahaSNP:100002839;rs6674132:0"/>
            <protocol_used lsid="urn:LSID:illumina.hapmap.org:Protocol:Golden_Gate_1.0.0:1"/>
            <batch type="multiplex-pool">GS0000578-OPA</batch>
            <status>
                <pass/>
            </status>
            <input_parameters>
                <beadarray_platform>
                    <seq_for_oligo_design>TTGTTGGAAAAATTTTTAGAGGGCAGTAATTGAAATGTCATATACTATAGTCTTTGAGGATGGAAAAGAGCTCAGTAAGTTTCTATTAATTGGTTATGCC[A/G]TTAAGATCAGCATCTAAAGAGAGCTAGGTCATGGAAAAAATGGCCTAAGTACTGGACTTACTATCAGAAGTACTGGACTTAAATTTTAATTCTTATGATTT</seq_for_oligo_design>
                </beadarray_platform>
            </input_parameters>
            <output_design>
                <strand>forward</strand>
                <beadarray_platform>
                    <allele1_combined_seq>ACTTCGTCAGTAACGGACGTCAGTAAGTTTCTATTAATTGGTTATGCCA</allele1_combined_seq>
                    <allele2_combined_seq>GAGTCGAGGTCATATCGTGTCAGTAAGTTTCTATTAATTGGTTATGCCG</allele2_combined_seq>
                    <common_combined_seq>TAAGATCAGCATCTAAAGAGAGCTGCGTTGCGACTACCGATACGTGTCTGCCTATAGTGAGTC</common_combined_seq>
                    <illumina_strand>top</illumina_strand>
                </beadarray_platform>
            </output_design>
        </assay>
        <assay lsid="urn:LSID:sanger.hapmap.org:Assay:1390344:1">
            <snp_assayed lsid="urn:LSID:jcm.hapmap.org:ssahaSNP:100000046:0"/>
            <protocol_used lsid="urn:LSID:illumina.hapmap.org:Protocol:Golden_Gate_1.0.0:1"/>
            <batch type="multiplex-pool">GS0000581-OPA</batch>
            <status>
                <pass/>
            </status>
            <input_parameters>
                <beadarray_platform>
                    <seq_for_oligo_design>GCAAGTGATAGCCTCCGGGTACAGATGGAAAGAGGGCCACCTAAGAATTTGATCTGGCCCAGAATGGAGAAAAACTCTCATCTCAAGGCTTTTATGGATCT[C/T]CTGTYTTGATCAGTTTGCCTCTTCTATTTAGATAGAGAGGGATGAAGAAAAAGAAGGTTAATTTGCATTGCAAAGTAAAGTGACACAATTTGAAAGCAGT</seq_for_oligo_design>
                </beadarray_platform>
            </input_parameters>
            <output_design>
                <strand>reverse</strand>
                <beadarray_platform>
                    <allele1_combined_seq>ACTTCGTCAGTAACGGACGTCTCATCTCAAGGCTTTTATGGATCTT</allele1_combined_seq>
                    <allele2_combined_seq>GAGTCGAGGTCATATCGTGTCTCATCTCAAGGCTTTTATGGATCTC</allele2_combined_seq>
                    <common_combined_seq>TCAGTTTGCCTCTTCTATTTAGACCGTGTATCCGCGCAAGTTCTAGTCTGCCTATAGTGAGTC</common_combined_seq>
                    <illumina_strand>bottom</illumina_strand>
                </beadarray_platform>
            </output_design>
        </assay>
        <assay lsid="urn:LSID:sanger.hapmap.org:Assay:1461759:1">
            <snp_assayed lsid="urn:LSID:jcm.hapmap.org:ssahaSNP:100004526;rs7315:0"/>
            <protocol_used lsid="urn:LSID:illumina.hapmap.org:Protocol:Golden_Gate_1.0.0:1"/>
            <batch type="multiplex-pool">GS0000581-OPA</batch>
            <status>
                <pass/>
            </status>
            <input_parameters>
                <beadarray_platform>
                    <seq_for_oligo_design>ATAACTCACACATGAGCAGCTCGCAAATTTCAAAGTCTTTGGTCTTCAAGTCCTATGTCACAGCTTCTCAGTCTGATTCCCTCCTTCTCTGTAGAATTC[C/T]GAGAACTAGTTTGGTTCACTTAATCATCTCAATGGAGATGGCCCTTTCCTGCCATTCACTCAAATCTAGAACTCCCAATATGTGGCTCACAAATACTTCAG</seq_for_oligo_design>
                </beadarray_platform>
            </input_parameters>
            <output_design>
                <strand>forward</strand>
                <beadarray_platform>
                    <allele1_combined_seq>ACTTCGTCAGTAACGGACGTGATTCCCTCCTTCTCTGTAGAATTCT</allele1_combined_seq>
                    <allele2_combined_seq>GAGTCGAGGTCATATCGTGTGATTCCCTCCTTCTCTGTAGAATTCC</allele2_combined_seq>
                    <common_combined_seq>AGAACTAGTTTGGTTCACTTAATCAAGACCTTCGGCTCTTATGCCCAGTCTGCCTATAGTGAGTC</common_combined_seq>
                    <illumina_strand>bottom</illumina_strand>
                </beadarray_platform>
            </output_design>
        </assay>
    </assays>
</assay_submission>
