<?xml version="1.0" encoding="UTF-8"?>
<!--$Id: snp_submission_good.xml,v 1.2 2004/10/16 20:16:33 mummi Exp $ -->
<snp_submission lsid="urn:lsid:dcc.hapmap.org:Batch:23432444:1"
  xmlns="http://www.hapmap.org"
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" 
    xsi:schemaLocation="http://www.hapmap.org http://www.hapmap.org/xml-schema/2003-11-04/hapmap.xsd"> 
    <batch_info>
    <class>NEW</class>
    <date_created>2004-01-20</date_created>
    <contact>
      <name>mummi</name>
      <email>mummi@cshl.org</email>
    </contact>
    <comment> 
   This is a test SNP submission intended for dbSNP and others who submit SNP data to the DCC. NB this
   is normally *not* needed by the genotyping centers who typically only need to use the genotype and assay
   submission format.  Last updated: $Date: 2004/10/16 20:16:33 $
     </comment>
    </batch_info>
<snps>
      <snp lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs3812543:114.1">
    <snp_class>
      <jsnp-verified/>
      <bac-overlap/>
      <cSNP/>
      <hapmap/>      
    </snp_class>
    <sequence>
      <flank_5>CTGGCACCTACCACGGGGACAGCCACCTGCAGCTGGAGCGCATCAACGTGYACCACCACGAGGCCAGCGGTGCGACCCCCGTCCTTCTCCCACCGCCCTCCTGGGAACGCGGCCCTCCCCTCGCTCATGCCCTCCCGCCCCACGCAGGTGGCAGGTACGTGCCCCGCGCTGTGCTCGTGGATCTGGAGCCGGGCACCATGGACTCTGTGCACTCGGGGCCCTTCGGGCAGGTCTTCAGGCCAGACAACTTCATTTCCGGTGAGCTGCGGGCGAGGACTGGGGTGCGGCTCCTTAGCCAGGGCAGCTCAAAATCCAGGAGTGCCCAAGGTCATCCTGTGGGAACTGTGGCGCCAGGGCCCCTGAACACCCTCCTATCCGCCGAGTCGAGTCGCTTCATCTGCCTCCTAAATGGGCTTCGGGAGGAAGGCCCCGGTGTCTCCTCAAGGTGAGGAGCTACTGATGTCCCTGCCGGGAGCTGAGCTGGGGCCGTGGCTACTGCCTTTCCTGAGAATGGGCAGGAGCCACCTGCAGCGAGGTCTGTGAACCCGTCTCAGGTTTGACTCCTGTCTTAATTTCTAACAGGGGAAGCTGCTGTCCTGTAACTCTGGAGGAGGGAGTTTCATTTGCTCCACCTGCAGGGCGAATGGTGCTTTCACCTCACATGTGACACTTGGCCCTTTCTGCATTATGGTGGTGACCACTGATGACCGTATACCTGGCCGTCGAGTGACCGGCTGTGCTGTCTTACAGGTCAGTGTGGGGCCGGAAACAACTGGGCCAAGGGACGCTACACAGAAGGCGCGGAGCTGAYGGAGTCAGTGATGGACGTTGTCAGAAAGGAGGCTGAGAGCTGTGACTGCCTGCAGGGTTTCCAGCTGACCCACTCCCTGGGTGGGGGGACTGGGTCTGGGATGGGTACCCTTCTCATTAGTAAGATCCGGGAGGAGTACCCAGACAGGATCATAAACACATTSAGCATCCTGCYCTYGCCCAAGGTGTC</flank_5>
      <variation mixed="true">
        <allele base="G"/>
        <allele base="A"/>
        <allele name="(LARGEDELETION)"/>
      </variation>
      <flank_3>GACACSGTGGTGGAGCCCTACAACGCCACCCTCTCAGTCCACCAGCTCATAGAAAACGCGGATGAGACCTTCTGCATAGATAACGAAGCGCTATATGACATATGTTCCAGGACCCTAAAACTGCCCACACCCACCTATGGTGACCTGAACCACCTGGTGTCTGCTACCATGAGTGGGGTCACCACATGCCTGCGCTTCCCAGGCCAGCTGAATGCTGACCTGMGGAAGCTGGCCGTGAACATGGTCCCGTTTCCCCGGCTGCATTTCTTCATGCCCGGCTTTGCCCCACTGACCAGCCGGGGCAGCCAGCAGTACCGGGCCTTGACTGTGGCTGAGCTYACCCAGCAGATGTTTGATGCTAAGAACATGATGGCTGCCYGTGACCCCYGTCACGGCTGCTACCTAACGGTGGCTGCCATTTTCAGGGGTCGCATGCCCATGAGGGAGGTGGATGAACARATGTTCAACATTCAAGATAAGAACAGCAGCTACTTTGCTGACTGGTTCCCCGACAACGTAAAAACAGCCGTCTGTGACATCCCACCCCGGGGGCTAAAAATGTCAGCCACCTTCATTGGGAATAATGCGGCCATCCAGGAACTCTTCACATGTGTCTCAGAGCAGTTTACAGCAATGTTCAGGCGCAAGGCCTTCCTCCACTGGTACACGGGCGAGGGCATGGATGAGATGGAATTCACCGAGGCCGAGAGCAACATGAACGACCTGGTGTCTGAATATCAGCAATATCAGGATGCCACGGCCgaggaggaggaggatgaggagtatgccgaggaggaggtggCCTAGAACTCTCCTTTTCTAGGTAAAGGGGGGAAGCAGTGTGGATTCTTTACTGTGTTCTGACAGCCATGTGTCACTATACGCTTGTTAATTTGTGTCTTCACATCTCCTGCTGCGTTTTAAAGCATTTTTATAGTATGCGGTTTTGACTAATAAAGTATTCTCACAGCATCTGGTTTTGCCTCCATCTTCTTTCTAT</flank_3>
      <length_class value="full-length"/>
    </sequence>
    <genomic_locations>
      <genomic_location active="true" type="exact">
        <assembly_version>ncbi_build34</assembly_version>
        <coordinates chrom="18" start="38197" stop="38197" strand="reverse"/>
      </genomic_location>
    </genomic_locations>
    <neighbour_snps>
      <neighbour_snp lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs4081432:108"/>
      <neighbour_snp lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs4023076:108"/>
      <neighbour_snp lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs4023075:108"/>
      <neighbour_snp lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs3874675:108"/>
      <neighbour_snp lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs4798099:111"/>
      <neighbour_snp lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs4798100:111"/>
      <neighbour_snp lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs4798102:111"/>
      <neighbour_snp lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs4798103:111"/>
      <neighbour_snp lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs4798104:111"/>
      <neighbour_snp lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs4798106:111"/>
      <neighbour_snp lsid="urn:lsid:ncbi.nlm.nih.gov:dbSNP;refSNP:rs4413042:111"/>
    </neighbour_snps>
  </snp>
    </snps>
</snp_submission>
